京都大学生態学研究センター 工藤洋研究室

Japanese / English

Publication 業績

原著論文 (英文・査読有り)

  1. Nishio H, Cano-Ramirez DL, Muranaka T, de Barros Dantas LL, Honjo MN, Sugisaka J, Kudoh H, Dodd AN (2024) Circadian and environmental signal integration in a natural population of Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 121: e2402697121 (Journal)
  2. Shinke T, Yamazaki A, Nakamura S, Kudoh H, Hosokawa M (2024) Genetic diversification of allohexaploid Brassica hybrids (AABBCC) using a fertile octoploid with excessive C genome set (AABBCCCC). Planta 260: 71 Journal
  3. Yumoto G, Nishio H, Muranaka T, Sugisaka J, Honjo MN, Kudoh H (2024) Seasonal switching of integrated leaf senescence controls in an evergreen perennial Arabidopsis. Nature Communications 15: 4719 (Journal)
  4. Nakayama T, Tanikawa M, Okushi Y, Itoh T, Shimmura T, Maruyama M, Yamaguchi T, Matsumiya A, Shinomiya A, Guh YJ, Chen J, Naruse K, Kudoh H, Kondo Y, Naoki H, Aoki K, Nagano AJ, Yoshimura, T (2023) A transcriptional program underlying the circannual rhythms of gonadal development in medaka. Proceedings of the National Academy of Sciences of the United States of America, 120: e2313514120. (Journal)
  5. Seki M, Kuze Y, Zhang X, Kurotani KI, Notaguchi M, Nishio H, Kudoh H, Suzaki T, Yoshida S, Sugano S, Matsushita T, Suzuki Y (2023) An improved method for the highly specific detection of transcription start sites. Nucleic Acids Research gkad1116 (Journal)
  6. Akiyama R, Goto T, Tameshige T, Sugisaka J, Kuroki K, Sun J, Akita J, Hatakeyama M, Kudoh H, Tanaka K, Tonouchi A, Shimahara Y, Sese J, Kutsuna N, Shimizu-Inatsugi R, Shimizu KK (2023) Seasonal pigment fluctuation in diploid and polyploihttps://www.nature.com/articles/s41467-024-48814-zd Arabidopsis revealed by machine learning-based phenotyping method PlantServation. Nature Communiations 14: 5792 (Journal)
  7. Emura N, Muranaka T, Iwasaki T, Honjo MN, Nagano A, Isagi Y, Kudoh H (2022) Effects of fruit dimorphism on genetic structure and gene flow in the coastal shrub Scaevola taccada. Annals of Botany : mcac138 (Journal)
  8. Nishio H, Kudoh H (2023) Distinct responses to autumn and spring temperatures by the key flowering-time regulator FLOWERING LOCUS C. Current Opinion in Genetics & Development 78: 102016 (Journal)
  9. Muranaka T, Ito S, Kudoh H, Oyama T (2022) Circadian-period variation underlies the local adaptation of photoperiodism in the short-day plant Lemna aequinoctialis. iScience 25: 104634 (Journal)
  10. Yumoto G, Sasaki-Sekimoto Y, Aryal B, Ohta H, Kudoh H (2021) Altitudinal differentiation in the leaf wax-mediated flowering bud protection against frost in a perennial Arabidopsis. Oecologia 95(3):677-687(Journal)
  11. Akiyama R, Sun J, Hatakeyama M, Lischer HEL, Briskine RV, Hay A, Gan X, Tsiantis M, Kudoh H, Kanaoka MM, Sese J, Shimizu KK, Shimizu‐Inatsugi R (2021) Fine‐scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species.New phytologist 229:3587–3601(Journal)
  12. Nishio H, Iwayama K, Kudoh H (2020) Duration of cold exposure defines the rate of reactivation of a perennial FLC orthologue via H3K27me3 accumulation. Scientific Reports 10:16056 (Journal)
  13. Nishio H, Nagano AJ, Ito T, Suzuki Y, Kudoh H (2020) Seasonal plasticity and diel stability of H3K27me3 in natural fluctuating environments. Nature Plants 6:1091–1097(Journal)
  14. Araki KS, Nagano AJ, Nakano RT, Kitazume T, Yamaguchi K, Hara-Nishimura I, Shigenobu S, Kudoh H (2020) Characterization of rhizome transcriptome and identification of a rhizomatous ER body in the clonal plant Cardamine leucantha. Scientific Reports 10:13291 (Journal)
  15. Kamitani M, Okuno T, Kudoh H (2020) Complete genome sequence of a novel partitivirus from a wild brassicaceous plant, Arabidopsis halleri. Archives of Virology (Journal)
  16. Nishio H, Buzas DM, Nagano AJ, Iwayama K, Ushio M, Kudoh H (2020) Repressive chromatin modification underpins the long-term expression trend of a perennial flowering gene in nature. Nature Communications 11, 2065. (Journal)
  17. Honjo MN, Marhold K, Kudoh H (2020) Experimental evaluation of differences in plastic phenotypes between Cardamine fallax and C. occulta: effects of seasonality on phenology and gross morphology. Acta Phytotaxonomica et Geobotanica 71: 23-32. (Journal)
  18. Okuyama Y, Goto N, Nagano AJ, Yasugi M, Kokubugata G, Kudoh H, Qi Z, Ito T, Kakishima S, Sugawara T (2020) Radiation history of Asian Asarum (sect. Heterotropa, Aristolochiaceae) resolved using a phylogenomic approach based on double-digested RAD-seq data. Annals of Botany (Journal)
  19. Sakaguchi S, Nagano AJ, Yasugi M, Kudoh H, Ishikawa N, Ito M (2020) Genetic consequences of being a dwarf: Do evolutionary changes in life-history traits influence gene flow patterns in populations of the world's smallest goldenrod? Annals of Botany (Journal)
  20. Tsujimoto M, Araki KS, Honjo MN, Yasugi M, Nagano AJ, Akama S, Hatakeyama M, Shimizu-Inatsugi R, Sese J, Shimizu KK, Kudoh H (2020) Genet assignment and population structure analysis in a clonal forest-floor herb, Cardamine leucantha, using RAD-seq. AoB plants12(1):plz080 (Journal)
  21. Honjo MN, Emura N, Kawagoe T, Sugisaka J, Kamitani M, Nagano AJ, Kudoh H (2020) Seasonality in interactions between a plant virus and its host in a persistent infection. The ISME Journal14 506–518 (Journal)
  22. Honjo MN, Kudoh H (2019) Arabidopsis halleri: a perennial model system for studying population differentiation and local adaptation. AoB plants11(6):plz076 (Journal)
  23. Mandáková T, Zozomová-Lihová J, Kudoh H, Zhao Y, Lysak MA, Marhold K (2019) The story of promiscuous crucifers: origin and genome evolution of an invasive species, Cardamine occult (Brassicaceae), and its relatives Annals of Botany 124(2) 209-220 (Journal)
  24. Ito T, Nishio H, Tarutani Y, Emura N, Honjo MN, Toyoda A, Fujiyama A, Kakutani T, Kudoh H (2019) Seasonal stability and dynamics of DNA methylation in plants in a natural environment Genes 10(7) 544 (Journal)
  25. Nagano AJ, Kawagoe T, Sugisaka J, Honjo MN, Iwayama K, Kudoh H (2019) Annual transcriptome dynamics in natural environments reveals plant seasonal adaptation, Nature Plants 5:74-83 (Journal)
  26. Kamitani M, Nagano AJ, Honjo MN, Kudoh H (2018) A Survey on Plant Viruses in Natural Brassicaceae Communities Using RNA-Seq, Microbial Ecology78:113-121 (Journal)
  27. Miryeganeh M, Yamaguchi M, Kudoh H (2018) Synchronisation of Arabidopsis flowering time and whole-plant senescence in seasonal environments. Scientific Reports 2018; 8: 10282. (Journal)
  28. Aryal B, Shinohara W, Honjo MN, Kudoh H (2018) Genetic differentiation in cauline-leaf-specific wettability of a rosette-forming perennial Arabidopsis from two contrasting montane habitats. Annals of Botany mcy033 (Journal)
  29. Kamitani M, Nagano AJ, Honjo MN, Kudoh H (2017) First report of Pelargonium zonate spot virus from wild Brassicaceae plants in Japan. Journal of General Plant Pathology 83(5):329-332 (Journal)
  30. Sato Y, Kudoh H (2017) Herbivore-mediated interaction promotes the maintenance of trichome dimorphism through negative frequency-dependent selection. The American Naturalist 190(3):E67-E77 (Journal)
  31. Sato Y, Kudoh H (2017) Fine-scale frequency differentiation along a herbivory gradient in the trichome dirmorphism of a wild Arabidopsis. Ecology and Evolution 7(7):2133-2141. (Open Access )
  32. Sato Y, Kudoh H (2016) Presence of substitute diets alters plant resistance to specialist and generalist herbivores: a meta-analysis. Ecosphere doi:10.1002/ecs2.1446 (Open Access)
  33. Kamitani M, Nagano AJ, Honjo MN, Kudoh H (2016), RNA-Seq reveals virus-virus and virus-plant interactions in nature. FEMS Microbiology Ecology, 92 doi: 10.1093/femsec/fiw176
  34. Shimizu‐Inatsugi R, Terada A, Hirose K, Kudoh H, Sese J, Shimizu KK (2016). Plant adaptive radiation mediated by polyploid plasticity in transcriptomes. Molecular Ecology
  35. Nishio H, Buzas DM, Nagano AJ, Suzuki Y, Sugano S, Ito M, Morinaga SI, Kudoh H (2016) From the laboratory to the field: assaying histone methylation at FLOWERING LOCUS C in naturally growing Arabidopsis halleri. Genes & Genetic Systems 91(1):15-26
  36. Kudoh H (2016) Molecular phenology in plants: systems biology for the comprehensive understanding of seasonal responses under natural environments. New Phytologist doi:10.1111/nph.13733, 210(2):399-412
  37. Sato Y, Kudoh H (2016) Associational effects against a leaf beetle mediate a minority advantage in defense and growth between hairy and glabrous plants. Evolutionary Ecology doi:10.1007/s10682-015-9809-0, 30:137
  38. Sakaguchi S, Sugino T, Tsumura Y, Ito M, Crisp MD, Bowman MJSD, Nagano AJ, Honjo MN, Yasugi M, Kudoh H, Matsuki Y, Suyama Y, Isagi Y (2015) High-throughput linkage mapping of Australian white cypress pine (Callitris glaucophylla) and map transferability to related species. Tree Genetics & Genomes doi:10.1007/s11295-015-0944-0, 11:121
  39. Ushio M, Yamasaki E, Takasu H, Nagano AJ, Honjo MN, Fujinaga S, Ikemoto M, Sakai S, Kudoh H (2015) Microbial communities on flower surfaces act as signatures of pollinator visitation. Scientific Reports 5: 8695
  40. Sato Y, Kudoh H (2015) Tests of associational defence provided by hairy plants for glabrous plants of Arabidopsis halleri subsp. gemmifera against insect herbivores. Ecological Entomology 40: 269-279
  41. Nagano AJ, Honjo MN, Mihara M, Sato M, Kudoh H (2015) Detection of plant viruses in natural environments by using RNA-Seq. Methods in Molecular Biology 1236: 89-98
  42. Sato Y, Kudoh H (2014) Fine-scale genetic differentiation of a temperate herb: relevance of local environments and demographic change. AoB PLANTS 6: plu70
  43. Mochizuki K, Nagano AJ, Kudoh H, Kawakita A (2014) Isolation and characterization of 11 microsatellite markers for Glochidion acuminatum (Phyllanthaceae). Applications in Plant Sciences 2:(9)
  44. Sato Y, Kawagoe T, Sawada Y, Hirai MY, Kudoh H (2014) Frequency-dependent herbivory by a leaf beetle, Phaedon brassicae, on hairy and glabrous plants of Arabidopsis halleri subsp. gemmifera. Evolutionary Ecology 28: 545-559
  45. Nishio H, Nagano AJ, Buzas DM, Kudoh H (2013) Seasonal analysis of histone modifications at FLOWERING LOCUS C in a natural perennial population. GENES & GENETIC SYSTEMS 88: 336-336
  46. Kudoh H, Takayama K, Kachi N (2013) Loss of seed buoyancy in Hibiscus glaber on the oceanic Bonin Islands. Pacific Science 67: 591-597
  47. Satake A, Kawagoe T, Saburi Y, Chiba Y, Sakurai G, Kudoh H (2013) Forecasting flowering phenology under climate warming by modelling the regulatory dynamics of flowering-time genes. Nature Communications 4: 2303
  48. Sato Y, Kudoh H (2013) Relative strength of phenotypic selection on the height and number of flowering-stalks in the rosette annual Cardamine hirsuta (Brassicaceae). Journal of Ecology and Environment 36: 151-158
  49. Araki KS, Nakazawa T, Kawakita A, Kudoh H, Okuda N (2012) Development of nine markers and characterization of the microsatellite loci in the endangered Gymnogobius isaza (Gobiidae). International Journal of Molecular Sciences 13: 5700-5705.
  50. Matsuhashi S, Sakai S, Kudoh H (2012) Temperature-dependent fluctuation of stamen number in Cardamine hirsuta (Brassicaceae). International Journal of Plant Sciences 173: 391-398.
  51. Kawagoe T, Shimizu KK, Kakutani T, Kudoh H (2011) Coexistence of trichome variation in a natural plant population: a combined study using ecological and candidate gene approaches. PLoS ONE 6: e22184.
  52. Fujimoto R, Sasaki T, Kudoh H, Taylor JM, Kakutani T, Dennis ES (2011) Epigenetic variation in the FWA gene within the genus Arabidopsis. The Plant Journal 66: 831-843.
  53. Araki K. S, Kaneko S, Isagi Y, Kudoh H (2012) Isolation and characterization of miocrosatellite loci in a clonal herb, Cardamine leucantha (Brassicaceae). American Journal of Botany: e385-e387.
  54. Momokawa N, Kadono Y, Kudoh H (2011) Effects of light quality on leaf morphogenesis of a heterophyllous amphibious plant, Rotala hippuris. Annals of Botany 108: 1299-1306.
  55. Shimizu KK, Kudoh H, Kobayashi MJ (2011) Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology. Annals of Botany 108: 777-787.
  56. Kawagoe T, Kudoh H (2010) Escape from floral herbivory by early flowering in Arabidopsis halleri subsp. gemmifera. Oecologia 164: 713-720.
  57. Aikawa S, Kobayashi MJ, Satake A, Shimizu KK, Kudoh H (2010) Robust control of seasonal expression of Arabidopsis FLC gene in a fluctuating environment. Proceedings of the National Academy of Sciences of the United States of America 107: 11632-11637.
  58. Marhold K, Kudoh H, Pak JH, Watanabe K, Spaniel S, Lihova J (2010) Cytotypic diversity and genome size variation in eastern Asian polyploid Cardamine (Brassicaceae) species. Annals of Botany 105: 249-264.
  59. Shinohara W, Ushio Y, Seo A, Nakato N, Kono M, Kudoh H, Tobe H, Murakami N (2010) Evidence for hybrid origin and segmental allopolyploidy in eutetraploid and aneutetraploid Leposorus thunbergianus (Polypodiaceae). Systematic Botany 35: 20-29.
  60. Lihova J, Kudoh H, Marhold K (2010) Morphometric studies of polyploid Cardamine species (Brassicaceae) from Japan: solving a long-standing taxonomic and nomenclatural controversy. Australian Systematic Botany 23: 1-18.
  61. Lihova J, Kudoh H, Marhold K (2010) Genetic structure and phylogeography of a temperate-boreal herb, Cardamine scutata (Brassicaceae), in northeastern Asia from AFLPs and cpDNA haplotypes. American Journal of Botany 97: 1-13.
  62. Shimizu-Inatsugi R, Lihova J, Iwanaga H, Kudoh H, Marhold K, Savolainen O, Watanabe K, Yakubov VV, Shimizu KK (2008) The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri. Molecular Ecology 18: 4024-4048.
  63. Sugisaka J, Kudoh H (2008) Breeding system of the annual Cruciferae, Arabidopsis kamchatica subsp. kawasakiana. Journal of Plant Research 121: 65-68.
  64. Hosaka N, Kachi N, Kudoh H, Stuefer JF, Whigham DF (2008) Patch structures and ramet demography of the clonal tree, Asimina triloba, under gap and closed-canopy. Plant Ecology 197: 219-228.
  65. Fujimoto R, Kinoshita Y, Kawabe A, Kinoshita T, Takashima K, Nordborg M, Nasrallah ME, Shimizu KK, Kudoh H, Kakutani T (2008) Evolution and control of imprinted FWA genes in the genus Arabidopsis. PLoS Genetics 4: e1000048
  66. Kudoh H, Nakayama M, Lihova J, Marhold K (2007) Does invasion involve alternation of germination requirements? A comparative study between native and introduced strains of an annual Brassicaceae, Cardamine hirsuta. Ecological Research 22: 869-875
  67. Marhold K, Lihova J, Al-Shehbaz IA, Kudoh H (2007) The correct interpretation and lectotypification of the name Cardamine fallax (Brassicaceae). Journal of Plant Research 120: 655-660
  68. Shimamura R, Kachi N. Kudoh H, Whigham DF (2007) Hydrochory as a determinant of genetic distribution of seeds within Hibiscus moscheutos (Malvaceae) populations. American Journal of Botany 94: 1137-1145
  69. Lihova J, Marhold K, Kudoh H, Koch MA (2006) Worldwide phylogeny and biogeography of Cardamine flexuosa (Brassicaceae) and its relatives. American Journal of Botany 93: 1206-1221
  70. Kudoh H, Shimamura R, Takayama K, Whigham DF (2006) Consequence of hydrochory in Hibiscus. Plant Species Biology 21: 127-133
  71. Shimizu KK, Fujii S, Marhold K, Watanabe K, Kudoh H (2005) Arabidopsis kamchatica (Fisch. ex DC.) K. Shimizu & Kudoh and A. kamchatica subsp. kawasakiana (Makino) K. Shimizu & Kudoh, New combinations. Acta Phytotaxonomica et Geobotanica 56: 163-172.
  72. Shimamura R, Kachi N, Kudoh H, Whigham DF (2005) Visitation of a specialist pollen feeder Althaeus hibisci Olivier (Coleoptera: Bruchidae) to flowers of Hibiscus moscheutos L. (Malvaceae). The Journal of the Torrey Botanical Society 132: 197-203. [Abstract]
  73. Takayama K, Ohi-Toma T. Kudoh H, Kato H (2005) Origin and diversification of Hibiscus glaber, species endemic to the oceanic Bonin Islands, revealed by chroloplast DNA polymorphism. Molecular Ecology 14: 1059-1071.
  74. Yatsu Y, Kachi N, Kudoh H (2003) Ecological distribution and phenology of an invasive species, Cardamine hirsuta L. and its native counterpart, Cardamine flexuosa With, in central Japan. Plant Species Biology 18: 35-42.
  75. Kitamura K, Morita T, Kudoh H, O'Neill J, Utech FH, Whigham DF, Kawano S (2003) Demographic genetics of the American beech (Fagus grandifolia Ehrh.) III. Genetic substructuring of coastal plain population in Maryland. Plant Species Biology 18: 13-33.
  76. Tani T, Kudoh H, Kachi N (2003) Responses of root length/leaf area ratio and specific root length of an understory herb, Pteridophyllum racemosum, to increases in irradiance. Plant & Soil 255: 227-237.
  77. Suzuki OR, Kudoh H, Kachi N (2003) Spatial and temporal variations in mortality of the biennial Lysimachia rubida: effects of intraspecific competition and environmental heterogeneity. Journal of Ecology 91: 114-125.
  78. Feller IC, Kudoh H, Tanner CE, Whigham DF (2003) Sex-biased herbivory in Jack-in-the-Pulpit (Arisaema triphyllum) by a specialist Thrips (Heterothrips arisaemae). Proceedings 7th International Thysanoptera Conference. Reggio Callabrio, Italy.
  79. Kudoh H, Kachi N, Kawano S, Whigham DF (2002) Intrinsic cost of delayed flowering in annual plants: negative correlation between flowering time and reproductive effort. Plant Species Biology 17: 101-107.
  80. Ozawa M, Kudoh H, Kachi N (2001) Breeding system of Pteridophyllum racemosum Sieb. et Zucc. (Papaveraceae). Plant Species Biology 16: 237-239.
  81. Tani T, Kudoh H, Kachi N (2001) Responses of photosynthesis and biomass allocation of an understorey herb, Pteridophyllum racemosum, to gradual increases in irradiance. Annals of Botany 88: 393-402.
  82. Kudoh H, Sugawara T, Wu S, Murata J (2001) Morph specific correlations between floral traits in a distylous Ophiorrhiza napoensis Lo (Rubiaceae) population in southern China. Journal of Tropical Ecology 17: 719-728.
  83. Kudoh H, Whigham DF (2001) A genetic analysis of hydrologically dispersed seeds of Hibiscus moscheutos (Malvaceae). American Journal of Botany 88: 588-593.
  84. Kudoh H, Shibaike H, Takasu H, Whigham DF, Kawano S (1999) Genet structure and determinants of clonal structure in a temperate deciduous woodland herb, Uvularia perfoliata. Journal of Ecology 84: 244-257.
  85. Kudoh H, Whigham DF (1998) The effect of petal size manipulation on pollinator/seed-predator mediated female reproductive success of Hibiscus moscheutos. Oecologia 117: 70-79.
  86. Kudoh H, Whigham DF (1997) Microgeographic genetic structure and gene flow in Hibiscus moscheutos (Malvaceae) Populations. American Journal of Botany 84: 1285-1293.
  87. Kudoh H, Ishiguri Y, Kawano S (1996) Phenotypic plasticity in age and size at maturity and its effects on the integrated phenotypic expressions of life history traits of Cardamine flexuosa (Cruciferae). Journal of Evolutionary Biology 9: 541-570.
  88. Kudoh H, Ishiguri Y, Kawano S (1995) Phenotypic plasticity in Cardamine flexuosa: variation among populations in plastic response to chilling treatments and photoperiods. Oecologia 103: 148-156.
  89. Ishiguri Y, Kudoh H, Kawano S (1994) Effects of different photoperiods and chilling treatments on growth and reproduction of Cardamine flexuosa With. and its ecological implications. Plant Species Biology 9: 75-84.
  90. Kudoh H, Ishiguri Y, Kawano S (1993) Phenotypic variability in life history traits and phenology of field populations of Cardamine flexuosa and C. fallax (Cruciferae) in Honshu, Japan. Plant Species Biology 8: 7-20.
  91. Kudoh H, Ishiguri Y, Kawano S (1992) December. Cardamine hirsuta L, a new ruderal species introduced into Japan. The Journal of Phytogeography and Taxonomy 40: 85-89.

著書・総説

  1. Kudoh H, Honjo MN, Nishio H, Sugisaka J. (2018) The Long-Term "In Natura" Study Sites of Arabidopsis halleri for Plant Transcription and Epigenetic Modification Analyses in Natural Environments. Methods in Molecular Biology 2018;1830:41-57 (DIO)
  2. 工藤洋 (2017) 日本産アブラナ科タネツケバナ属雑草の生物学．雑草研究　62:175-183.1
  3. 神谷麻梨・永野惇・本庄三恵・工藤洋 (2017) 野生植物とウイルスの見えない相互作用をRNA-Seqで観る. 植物科学の最前線 BSJ-Review8A:12-21
  4. 永野惇・工藤洋 (2013) 野外の環境における生物の環境応答の理解にむけて：トランスクリプトームデータと気象データの統合. ライフサイエンス領域融合レビュー 3: e009
  5. Kudoh H, and Nagano AJ (2013) Memory of Temperature in the Seasonal Control of Flowering Time: An Unexplored Link Between Meteorology and Molecular Biology. Evolutionary Biology: Exobiology and Evolutionary Mechanisms. pp. 195-215, Springer
  6. 相川慎一郎・工藤洋 (2011) 季節を測る分子メカニズム：遺伝子機能のイン・ナチュラ研究. 89-108, 種生物学会編「ゲノムが拓く生態学」文一総合出版.
  7. 工藤洋 (2007) 適応的な表現型可塑性による複数ハビタット利用とハビタット選択．日本生態学会誌 57: 66-70
  8. 杉阪次郎・川越哲博・工藤洋 (2007) シロイヌナズナにおける開花の表現型可塑性とその分子遺伝学的基盤．日本生態学会誌 57: 48-54
  9. 工藤洋 (2007) 局所適応と生態的分化. 107-115, 清水健太郎・長谷部光泰編「植物の進化」秀潤社
  10. 工藤洋・Marhold K・Lihova J. (2006) 日本産ジャニンジン・タネツケバナ・ミチタネツケバナ・コタネツケバナ（アブラナ科タネツケバナ属）に関するノート. 分類 6: 41-49
  11. 工藤洋・嶋村良治 (2005) 湿原における種子の水散布－野外集団の遺伝変異と集団遺伝学的解析を用いた研究.Pp.183-204.種生物学会編「草木を見つめる科学：植物の生活史研究」，文一総合出版．
  12. 工藤洋 (2004) タネツケバナ. pp. 65-72. 河野昭一編「植物生活史図鑑II」，北海道大学図書刊行会．
  13. 工藤洋 (2003) 一年生植物，多年生植物. pp.15. 巌佐庸ら編「生態学事典」，共立出版．
  14. 工藤洋 (2001) 植物集団間のジーンフローに影響する生態学的要因．日本生態学会誌 51: 193-201．
  15. 工藤洋 (2000) 表現型可塑性とはなにか. pp. 66-74. 種生物学会編「花生態学の最前線：美しさの進化的背景を探る」，文一総合出版．
  16. 河野昭一・石栗義雄・工藤洋 (2000) タネツケバナ. pp. 96-97. 河野昭一監修「FieldWatching3: 早春の季節を歩く」，北隆館．
  17. 工藤洋 (1998) 植物の見かけはどう決まるか：表現型可塑性と形質変異. 科学（岩波書店）68: 416-424.

紀要・報告書等

  1. 工藤洋・相川慎一郎. 2009. 自然条件下における開花調節‐遺伝子機能のコンテクスト依存性‐．時間生物学 15(1): 27-32．
  2. 可知直毅・鈴木準一郎・工藤洋・本間暁・中野隆・松田こずえ. 2002. 火山噴火の植生への影響評価に関する研究. pp.77-92. 山嵜晴雄編. 三宅島噴火による地形・環境変化の実態解明と防災マップ作成. 東京都立大学.
  3. 高野朝子・工藤洋・可知直毅. 2002. かく乱依存種ホナガソウの発芽特性．小笠原年報 25: 57-65．
  4. 高島知子・工藤洋・可知直毅. 2002. モンテンボクの花弁サイズと土壌の水分条件との関連．小笠原年報 25: 57-65.
  5. Takayama, K, Ohi, T, Kato, H. and Kudoh, H. 2002. Capsulemorphology and geographic distribution of Ogasawara Research 27: 31-55.
  6. 市川百合子・工藤洋・可知直毅．2001．オオハマボッスの発芽フェノロジーとシードバンク形成．小笠原年報24:31-39.
  7. Hirota, Y, Kudoh, H. and Kachi, N. 2000. Determinants of reproductive success in woody Hibiscus in the Bonin (Ogasawara) Islands. Ogasawara Research 25: 27-51.
  8. 可知直毅・工藤洋・芝池博幸・河野昭一・石栗義雄・津田雅孝．2000．植物の集団および種における形質発現と適応機構の解析．東北大学遺伝学生態研究センター年報2000年: 56-60.
  9. 工藤洋．2000．動的な森林更新下での林床草本の遺伝的集団構造の決定機構．日産科学財団研究報告書23: 145-148.
  10. Kudoh, H, Wada, M, Murata, J. and Wcicki, J.J. 1999. Japonskie Towarzysto Botaniczne (The Botanical Society of Japan). Wiadomosci Botaniczne 43: 82-84 (translated into Polish).
  11. 鈴木亮・工藤洋・可知直毅．1999．父島列島南島のオオハマボッスの個体群動態．小笠原年報 23: 35-40.
  12. Kudoh, H, Uchiyama, M. and Kachi, N. 1998. Flower size variation in Hibiscus glaber and H. tiliaceus in Chichijima Island, theBonin (Ogasawara) Islands. Ogasawara Research 24: 25-34.
  13. 工藤洋・可知直毅．1998．小笠原諸島父島におけるオオハマボウ (Hibiscus tiliaceus L.) 自然集団の分布．小笠原年報 21: 56-60.
  14. 工藤洋．1998．環境・遺伝子型・表現型の間を結ぶ関係のもう一つの見方「遺伝子型-環境相関」．東北大学遺伝生態研究センター通信 41: 4-7.
  15. 工藤洋・芝池博幸・石栗義雄・河野昭一. 1993. 植物の表現型可塑性と集団分化. IGEシリーズ 17，「植物の形質発現と環境適応機構」27-40.
  16. 河野昭一・石栗義雄・工藤洋・芝池博幸. 1993. 植物における形質発現と表現型可塑性にみられる集団分化. 種生物学研究 17: 21-32.
  17. 石栗義雄・工藤洋・河野昭一1989. 制御環境下における植物表現型可塑性の解析. IGEシリーズ 9，「生態研究と環境制御」25-36.

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